Unraveling Human Hepatocellular Responses to PFAS and Aqueous Film-Forming Foams (AFFFs) for Molecular Hazard Prioritization and In Vivo Translation
Kevin A. Mauge-Lewis1,‡, Sreenivasa C. Ramaiahgari1,‡, Scott S. Auerbach1, Georgia K. Roberts1, Suramya Waidyanatha1, Suzanne E Fenton1, Dhiral P. Phadke2, Michele R. Balik-Meisner2, Arpit Tandon2, Deepak Mav2, Brian Howard2, Ruchir Shah2, Barney Sparrow3, Jenni Gorospe3, Stephen S. Ferguson1
‡These authors equally contributed to this study.
1Division of Translational Toxicology at the National Institute for Environmental Sciences, Research Triangle Park, North Carolina
2Sciome, Research Triangle Park, North Carolina
3Battelle, Columbus, Ohio
DOI: https://doi.org/10.22427/NTP-DATA-500-017-001-000-4
Publication
Abstract
Aqueous film-forming foams (AFFFs) are complex product mixtures that often contain per-and poly- fluorinated alkyl substances (PFAS) to enhance fire suppression and protect firefighters. However, PFAS have been associated with a range of adverse health effects (e.g., liver and thyroid disease, cancer), and innovative approach methods to better understand their toxicity potential and identify safer alternatives are needed. In this study, we investigated a set of 30 substances (e.g., AFFF, PFAS, and clinical drugs) using differentiated cultures of human hepatocytes (HepaRG™, 2D), high throughput transcriptomics, deep learning of cell morphology images, liver enzyme leakage assays, and benchmark dose analysis that: 1) predict the potency ranges for human liver injury, 2) delineate gene- and pathway-level transcriptomic points-of-departure for molecular hazard characterization and prioritization, 3) characterize human hepatocellular response similarities to inform regulatory read-across efforts, and 4) introduce an innovative approach to translate mechanistic hepatocellular response data to predict PFAS-induced hepatomegaly potency. Collectively, these data fill important mechanistic knowledge gaps with PFAS/AFFF and represent a scalable platform to address the thousands of PFAS in commerce for greener chemistries and next generation risk assessments.
Data
Figures
- Hepatocellular-response Similarity.pdf (286 KB)
- Liver Injury Thresholding.pdf (326 KB)
- LOEL prediction comparisons for all PFAS.pdf (1 MB)
- Modelling In Vivo Liver Weight LOEL.pdf (433 KB)
Transcriptomic Analysis Files
- AFFF HTT % BMCs-final.bm2 (123 MB)
- AFFF HTT uM BMCs-final.bm2 (126 MB)
- AFFF HTT uM BMCs-final-shorter labels-Gene Level SILI.bm2 (111 MB)
- AFFF-BMCs-%-R1&2-Unfiltered cytotox-stress for liver injury thresholds.bm2 (108 MB)
- BMC105 Rankings-final-3.xlsx (6 MB)
- Final export of identified pathways (3).xlsx (12 MB)
Transcriptomic Data Files
- Raw Data from BioSpyder.zip (1 MB)
- Raw Data Metadata and Manifest.zip (354 KB)
- Raw Data Tgmx17.zip (3.0 GB)
- Analyzed Data.zip (252 MB)
- Processed Data.zip (21 MB)
- Data Information from BioSpyder.zip (1 MB)
- Wikipathways Category Map.txt (523 KB)
- Vehicle Controls for FDR Analysis.xlsx (9 MB)
- Vehicle Controls for FDR Analysis R1.txt (4 MB)
- Probe Map.txt (58 KB)
- Read Me.txt (1 KB)
LDH Leakage
- Raw Data HTT Runs.zip (120 KB)
- Analyzed LDH Data HTT Runs.zip (3 MB)
- Processed LDH Data HTT Runs.zip (3 MB)
- Plate maps.xlsx (26 KB)
Images With Deep Learning Calls on Morphology With EC10 Values
- Cell Morphology Image Analysis-Sciome.zip (2 MB)
- 96hrs EConly.xlsx (885 KB)
- Cell Morphology EC10 Averages.xlsx (12 KB)
- Metadata BioSpyder Sample Submission.xlsx (346 KB)
- Plate 1 - 0 hour.zip (548 MB)
- Plate 1 - 48 hour.zip (447 MB)
- Plate 1 - 96 hour.zip (446 MB)
- Plate 2 - 0 hour.zip (448 MB)
- Plate 2 - 48 hour.zip (444 MB)
- Plate 2 - 96 hour.zip (443 MB)
- Plate 3 - 0 hour.zip (482 MB)
- Plate 3 - 48 hour.zip (450 MB)
- Plate 3 - 96 hour.zip (450 MB)
- Plate 4 - 0 hour.zip (484 MB)
- Plate 4 - 48 hour.zip (448 MB)
- Plate 4 - 96 hour.zip (443 MB)
- Plate 5 - 0 hour.zip (455 MB)
- Plate 5 - 48 hour.zip (448 MB)
- Plate 5 - 96 hour.zip (448 MB)
- Plate 1 - 0 hour.zip (469 MB)
- Plate 1 - 48 hour.zip (466 MB)
- Plate 1 - 96 hour.zip (467 MB)
- Plate 2 - 0 hour.zip (448 MB)
- Plate 2 - 48 hour.zip (442 MB)
- Plate 2 - 96 hour.zip (448 MB)
- Plate 3 - 0 hour.zip (453 MB)
- Plate 3 - 48 hour.zip (445 MB)
- Plate 3 - 96 hour.zip (446 MB)
- Plate 4 - 0 hour.zip (484 MB)
- Plate 4 - 48 hour.zip (456 MB)
- Plate 4 - 96 hour.zip (443 MB)
- Plate 5 - 0 hour.zip (455 MB)
- Plate 5 - 48 hour.zip (448 MB)
- Plate 5 - 96 hour.zip (448 MB)
Cell Morphology Imaging-scoring Run1
Cell Morphology Imaging-scoring Run2
ATP Depletion Data via CellTiter-Glo
- ATP Depletion Raw Data.zip (151 KB)
- ATP Depletion Analyzed Data.zip (2 MB)
- ATP Depletion Processed Data.zip (8 MB)